pypeit package
Subpackages
- pypeit.bspline package
- pypeit.core package
- Subpackages
- Submodules
- pypeit.core.arc module
- pypeit.core.basis module
- pypeit.core.coadd module
calc_snr()
coadd_iexp_qa()
coadd_qa()
combspec()
compute_coadd2d()
compute_stack()
ech_combspec()
get_spat_bins()
get_wave_bins()
get_wave_ind()
get_ylim()
interp_oned()
interp_spec()
median_filt_spec()
multi_combspec()
poly_model_eval()
poly_ratio_fitfunc()
poly_ratio_fitfunc_chi2()
rebin2d()
renormalize_errors()
renormalize_errors_qa()
robust_median_ratio()
scale_spec()
scale_spec_qa()
scale_spec_stack()
smooth_weights()
sn_weights()
solve_poly_ratio()
spec_reject_comb()
update_errors()
weights_qa()
- pypeit.core.collate module
- pypeit.core.combine module
- pypeit.core.convert_DEIMOSsavfiles module
- pypeit.core.datacube module
align_user_offsets()
check_inputs()
compute_weights()
compute_weights_frompix()
correct_grating_shift()
create_wcs()
dar_fitfunc()
extract_standard_spec()
fitGaussian2D()
gaussian2D()
generate_WCS()
generate_cube_subpixel()
generate_image_subpixel()
get_output_filename()
get_output_whitelight_filename()
get_whitelight_pixels()
get_whitelight_range()
load_imageWCS()
make_good_skymask()
make_sensfunc()
make_whitelight_fromcube()
set_voxel_sampling()
subpixellate()
wcs_bounds()
- pypeit.core.extract module
- pypeit.core.findobj_skymask module
- pypeit.core.fitting module
- pypeit.core.flat module
- pypeit.core.flexure module
MultiSlitFlexure
calculate_image_offset()
calculate_image_phase()
flexure_interp()
get_archive_spectrum()
get_fwhm_gauss_smooth()
get_percentile_clipping()
get_sky_spectrum()
sky_em_residuals()
spat_flexure_shift()
spec_flex_shift()
spec_flex_shift_global()
spec_flex_shift_local()
spec_flexure_corrQA()
spec_flexure_qa()
spec_flexure_slit()
spec_flexure_slit_global()
- pypeit.core.flux_calib module
Flam_to_Nlam()
Nlam_to_Flam()
blackbody_func()
compute_zeropoint()
counts2Nlam()
eval_zeropoint()
extinction_correction()
find_standard()
find_standard_file()
fit_zeropoint()
get_mask()
get_sensfunc_factor()
get_standard_spectrum()
load_extinction_data()
load_filter_file()
mAB_to_cgs()
mask_stellar_helium()
mask_stellar_hydrogen()
scale_in_filter()
sensfunc()
standard_zeropoint()
stellar_model()
zeropoint_qa_plot()
zeropoint_to_throughput()
zp_unit_const()
- pypeit.core.framematch module
- pypeit.core.meta module
- pypeit.core.moment module
- pypeit.core.mosaic module
- pypeit.core.parse module
- pypeit.core.pca module
- pypeit.core.pixels module
- pypeit.core.plot module
- pypeit.core.procimg module
base_variance()
boxcar_average()
boxcar_fill()
boxcar_replicate()
cr_screen()
gain_frame()
grow_mask()
lacosmic()
pattern_frequency()
rect_slice_with_mask()
replace_column_linear()
replace_column_mean()
replace_columns()
rn2_frame()
subtract_overscan()
subtract_pattern()
trim_frame()
variance_model()
- pypeit.core.pydl module
- pypeit.core.qa module
- pypeit.core.scattlight module
- pypeit.core.skysub module
- pypeit.core.slitdesign_matching module
- pypeit.core.telluric module
Telluric
conv_telluric()
create_bal_mask()
eval_poly_model()
eval_qso_model()
eval_sensfunc_model()
eval_star_model()
eval_telluric()
general_spec_reader()
init_poly_model()
init_qso_model()
init_sensfunc_model()
init_star_model()
interp_telluric_grid()
poly_telluric()
qso_init_pca()
qso_pca_eval()
qso_telluric()
read_telluric_grid()
read_telluric_pca()
save_coadd1d_tofits()
sensfunc_telluric()
shift_telluric()
star_telluric()
tellfit()
tellfit_chi2()
unpack_orders()
- pypeit.core.trace module
atleast_one_edge()
build_trace_bpm()
count_edge_traces()
detect_slit_edges()
extrapolate_orders()
find_missing_orders()
fit_trace()
follow_centroid()
handle_orphan_edges()
identify_traces()
masked_centroid()
most_common_trace_row()
parse_user_slits()
peak_trace()
predicted_center_difference()
prepare_sobel_for_trace()
- pypeit.core.tracewave module
- pypeit.core.transform module
- pypeit.core.wave module
- Module contents
- pypeit.display package
- pypeit.images package
- pypeit.move_median package
- pypeit.par package
- Submodules
- pypeit.par.parset module
- pypeit.par.pypeitpar module
AlignPar
CalibrationsPar
Coadd1DPar
Coadd2DPar
Collate1DPar
CubePar
EdgeTracePar
ExtractionPar
FindObjPar
FlatFieldPar
FlexurePar
FluxCalibratePar
FrameGroupPar
ProcessImagesPar
PypeItPar
ReducePar
ReduxPar
ScatteredLightPar
SensFuncPar
SensfuncUVISPar
SkySubPar
SlitMaskPar
TelescopePar
TelluricPar
WaveTiltsPar
WavelengthSolutionPar
tuple_force()
- pypeit.par.util module
- Module contents
- Submodules
- pypeit.scripts package
- Submodules
- pypeit.scripts.arxiv_solution module
- pypeit.scripts.cache_github_data module
- pypeit.scripts.chk_alignments module
- pypeit.scripts.chk_edges module
- pypeit.scripts.chk_flats module
- pypeit.scripts.chk_for_calibs module
- pypeit.scripts.chk_noise_1dspec module
- pypeit.scripts.chk_noise_2dspec module
- pypeit.scripts.chk_scattlight module
- pypeit.scripts.chk_tilts module
- pypeit.scripts.chk_wavecalib module
- pypeit.scripts.clean_cache module
- pypeit.scripts.coadd_1dspec module
- pypeit.scripts.coadd_2dspec module
- pypeit.scripts.coadd_datacube module
- pypeit.scripts.collate_1d module
- pypeit.scripts.compare_sky module
- pypeit.scripts.compile_wvarxiv module
- pypeit.scripts.edge_inspector module
- pypeit.scripts.flux_calib module
- pypeit.scripts.flux_setup module
- pypeit.scripts.identify module
- pypeit.scripts.install_extinctfile module
- pypeit.scripts.install_linelist module
- pypeit.scripts.install_ql_calibs module
- pypeit.scripts.install_telluric module
- pypeit.scripts.install_wvarxiv module
- pypeit.scripts.lowrdx_skyspec module
- pypeit.scripts.multislit_flexure module
- pypeit.scripts.obslog module
- pypeit.scripts.parse_slits module
- pypeit.scripts.print_bpm module
- pypeit.scripts.qa_html module
- pypeit.scripts.ql module
- pypeit.scripts.run_pypeit module
- pypeit.scripts.scriptbase module
- pypeit.scripts.sensfunc module
- pypeit.scripts.setup module
- pypeit.scripts.setup_coadd2d module
- pypeit.scripts.setup_gui module
- pypeit.scripts.show_1dspec module
- pypeit.scripts.show_2dspec module
- pypeit.scripts.show_arxiv module
- pypeit.scripts.show_wvcalib module
- pypeit.scripts.skysub_regions module
- pypeit.scripts.tellfit module
- pypeit.scripts.trace_edges module
- pypeit.scripts.view_fits module
- Module contents
- Submodules
- pypeit.setup_gui package
- pypeit.spectrographs package
- Submodules
- pypeit.spectrographs.bok_bc module
- pypeit.spectrographs.gemini_flamingos module
- pypeit.spectrographs.gemini_gmos module
- pypeit.spectrographs.gemini_gnirs module
- pypeit.spectrographs.gtc_osiris module
- pypeit.spectrographs.jwst_nircam module
- pypeit.spectrographs.jwst_nirspec module
- pypeit.spectrographs.keck_deimos module
- pypeit.spectrographs.keck_esi module
- pypeit.spectrographs.keck_hires module
- pypeit.spectrographs.keck_kcwi module
- pypeit.spectrographs.keck_lris module
- pypeit.spectrographs.keck_mosfire module
- pypeit.spectrographs.keck_nires module
- pypeit.spectrographs.keck_nirspec module
- pypeit.spectrographs.lbt_luci module
- pypeit.spectrographs.lbt_mods module
- pypeit.spectrographs.ldt_deveny module
- pypeit.spectrographs.magellan_fire module
- pypeit.spectrographs.magellan_mage module
- pypeit.spectrographs.mdm_modspec module
- pypeit.spectrographs.mdm_osmos module
- pypeit.spectrographs.mmt_binospec module
- pypeit.spectrographs.mmt_bluechannel module
- pypeit.spectrographs.mmt_mmirs module
- pypeit.spectrographs.not_alfosc module
- pypeit.spectrographs.ntt_efosc2 module
- pypeit.spectrographs.opticalmodel module
- pypeit.spectrographs.p200_dbsp module
- pypeit.spectrographs.p200_tspec module
- pypeit.spectrographs.shane_kast module
- pypeit.spectrographs.slitmask module
- pypeit.spectrographs.soar_goodman module
- pypeit.spectrographs.spectrograph module
- pypeit.spectrographs.tng_dolores module
- pypeit.spectrographs.util module
- pypeit.spectrographs.vlt_fors module
- pypeit.spectrographs.vlt_sinfoni module
- pypeit.spectrographs.vlt_xshooter module
- pypeit.spectrographs.wht_isis module
- Module contents
- Submodules
- pypeit.specutils package
Submodules
- pypeit.alignframe module
- pypeit.archive module
- pypeit.bitmask module
- Class usage examples
BitMask
BitMask.nbits
BitMask.bits
BitMask.descr
BitMask.max_value
BitMask._fill_sequence()
BitMask._prep_flags()
BitMask.consolidate()
BitMask.correct_flag_order()
BitMask.flagged()
BitMask.flagged_bits()
BitMask.from_header()
BitMask.info()
BitMask.keys()
BitMask.minimum_dtype()
BitMask.parse_bits_from_hdr()
BitMask.prefix
BitMask.to_dict()
BitMask.to_header()
BitMask.toggle()
BitMask.turn_off()
BitMask.turn_on()
BitMask.unpack()
BitMask.version
- pypeit.cache module
- pypeit.calibframe module
CalibFrame
CalibFrame._base_header()
CalibFrame._validate()
CalibFrame.calib_file_format
CalibFrame.calib_keys_from_header()
CalibFrame.calib_type
CalibFrame.construct_calib_id()
CalibFrame.construct_calib_key()
CalibFrame.construct_file_name()
CalibFrame.copy_calib_internals()
CalibFrame.datamodel
CalibFrame.from_hdu()
CalibFrame.get_path()
CalibFrame.glob()
CalibFrame.ingest_calib_id()
CalibFrame.internals
CalibFrame.parse_calib_id()
CalibFrame.parse_calib_key()
CalibFrame.parse_key_dir()
CalibFrame.set_paths()
CalibFrame.to_file()
- pypeit.calibrations module
Calibrations
Calibrations.fitstbl
Calibrations.par
Calibrations.spectrograph
Calibrations.calib_dir
Calibrations.qa_path
Calibrations.reuse_calibs
Calibrations.show
Calibrations.user_slits
Calibrations.det
Calibrations.frame
Calibrations.calib_ID
Calibrations.msarc
Calibrations.mstilt
Calibrations.alignments
Calibrations.msbias
Calibrations.msdark
Calibrations.msbpm
Calibrations.wv_calib
Calibrations.slits
Calibrations.wavetilts
Calibrations.flatimages
Calibrations.steps
Calibrations.success
Calibrations.failed_step
Calibrations._chk_objs()
Calibrations._chk_set()
Calibrations.association_summary()
Calibrations.find_calibrations()
Calibrations.get_align()
Calibrations.get_arc()
Calibrations.get_association()
Calibrations.get_bias()
Calibrations.get_bpm()
Calibrations.get_dark()
Calibrations.get_flats()
Calibrations.get_instance()
Calibrations.get_scattlight()
Calibrations.get_slits()
Calibrations.get_tiltimg()
Calibrations.get_tilts()
Calibrations.get_wv_calib()
Calibrations.run_the_steps()
Calibrations.set_config()
IFUCalibrations
MultiSlitCalibrations
check_for_calibs()
- pypeit.coadd1d module
- pypeit.coadd2d module
CoAdd2D
CoAdd2D.check_input()
CoAdd2D.coadd()
CoAdd2D.compute_offsets()
CoAdd2D.compute_weights()
CoAdd2D.create_pseudo_image()
CoAdd2D.default_basename()
CoAdd2D.default_par()
CoAdd2D.get_brightest_object()
CoAdd2D.get_instance()
CoAdd2D.get_maskdef_dict()
CoAdd2D.get_wave_grid()
CoAdd2D.good_slitindx()
CoAdd2D.load_coadd2d_stacks()
CoAdd2D.offset_slit_cen()
CoAdd2D.offsets_report()
CoAdd2D.optimal_weights()
CoAdd2D.output_paths()
CoAdd2D.reduce()
CoAdd2D.reference_trace_stack()
CoAdd2D.snr_report()
EchelleCoAdd2D
MultiSlitCoAdd2D
- pypeit.coadd3d module
- pypeit.datamodel module
- DataContainer
DataContainer
DataContainer.__getattr__()
DataContainer.__getitem__()
DataContainer.__repr__()
DataContainer.__setattr__()
DataContainer.__setitem__()
DataContainer._base_header()
DataContainer._bundle()
DataContainer._check_parsed()
DataContainer._init_internals()
DataContainer._parse()
DataContainer._primary_header()
DataContainer._validate()
DataContainer.check_populated()
DataContainer.confirm_class()
DataContainer.datamodel
DataContainer.from_dict()
DataContainer.from_file()
DataContainer.from_hdu()
DataContainer.hdu_prefix
DataContainer.internals
DataContainer.keys()
DataContainer.one_row_table
DataContainer.output_to_disk
DataContainer.to_file()
DataContainer.to_hdu()
DataContainer.valid_write_to_hdu_type()
DataContainer.version
obj_is_data_container()
- pypeit.edgetrace module
EdgeTraceBitMask
EdgeTraceSet
EdgeTraceSet.traceimg
EdgeTraceSet.spectrograph
EdgeTraceSet.par
EdgeTraceSet.files
EdgeTraceSet.img
EdgeTraceSet.det
EdgeTraceSet.sobelsig
EdgeTraceSet.sobelsig_left
EdgeTraceSet.sobelsig_right
EdgeTraceSet.nspec
EdgeTraceSet.nspat
EdgeTraceSet.traceid
EdgeTraceSet.edge_img
EdgeTraceSet.edge_cen
EdgeTraceSet.edge_err
EdgeTraceSet.edge_msk
EdgeTraceSet.edge_fit
EdgeTraceSet.fittype
EdgeTraceSet.pca
EdgeTraceSet.pcatype
EdgeTraceSet.design
EdgeTraceSet.objects
EdgeTraceSet.qa_path
EdgeTraceSet.log
EdgeTraceSet.maskdef_id
EdgeTraceSet.omodel_bspat
EdgeTraceSet.omodel_tspat
EdgeTraceSet.coeff_b
EdgeTraceSet.coeff_t
EdgeTraceSet.maskfile
EdgeTraceSet._base_header()
EdgeTraceSet._bundle()
EdgeTraceSet._fill_design_table()
EdgeTraceSet._fill_objects_table()
EdgeTraceSet._flag_edges()
EdgeTraceSet._get_insert_locations()
EdgeTraceSet._get_reference_locations()
EdgeTraceSet._masked_single_slit()
EdgeTraceSet._parse_exclude_regions()
EdgeTraceSet._reinit_trace_data()
EdgeTraceSet._reset_pca()
EdgeTraceSet._side_dependent_sobel()
EdgeTraceSet.add_user_traces()
EdgeTraceSet.auto_trace()
EdgeTraceSet.bitmask
EdgeTraceSet.bound_detector()
EdgeTraceSet.build_pca()
EdgeTraceSet.calib_file_format
EdgeTraceSet.calib_type
EdgeTraceSet.can_pca()
EdgeTraceSet.centroid_refine()
EdgeTraceSet.check_synced()
EdgeTraceSet.check_traces()
EdgeTraceSet.clean_traces()
EdgeTraceSet.current_trace_locations()
EdgeTraceSet.datamodel
EdgeTraceSet.empty_design_table()
EdgeTraceSet.empty_objects_table()
EdgeTraceSet.fit_refine()
EdgeTraceSet.flagged_bits
EdgeTraceSet.from_hdu()
EdgeTraceSet.fully_masked_traces()
EdgeTraceSet.get_slits()
EdgeTraceSet.good_traces()
EdgeTraceSet.initial_trace()
EdgeTraceSet.insert_traces()
EdgeTraceSet.internals
EdgeTraceSet.is_empty
EdgeTraceSet.is_left
EdgeTraceSet.is_right
EdgeTraceSet.is_synced
EdgeTraceSet.maskdesign_matching()
EdgeTraceSet.match_order()
EdgeTraceSet.merge_traces()
EdgeTraceSet.nslits
EdgeTraceSet.ntrace
EdgeTraceSet.nudge_traces()
EdgeTraceSet.order_refine()
EdgeTraceSet.order_refine_fixed_format()
EdgeTraceSet.order_refine_free_format()
EdgeTraceSet.order_refine_free_format_qa()
EdgeTraceSet.output_float_dtype
EdgeTraceSet.pca_refine()
EdgeTraceSet.peak_refine()
EdgeTraceSet.predict_traces()
EdgeTraceSet.qa_plot()
EdgeTraceSet.rectify()
EdgeTraceSet.remove_traces()
EdgeTraceSet.rm_user_traces()
EdgeTraceSet.show()
EdgeTraceSet.slit_spatial_center()
EdgeTraceSet.spatial_sort()
EdgeTraceSet.sync()
EdgeTraceSet.synced_selection()
EdgeTraceSet.to_hdu()
EdgeTraceSet.trace_pixels_off_detector()
EdgeTraceSet.version
- pypeit.extraction module
EchelleExtract
Extract
Extract.ivarmodel
Extract.objimage
Extract.skyimage
Extract.global_sky
Extract.outmask
Extract.extractmask
Extract.slits
Extract.sobjs_obj
Extract.sobjs
Extract.spat_flexure_shift
Extract.tilts
Extract.waveimg
Extract.slitshift
Extract.vel_corr
Extract.extract_bpm
Extract.extract()
Extract.get_instance()
Extract.initialize_slits()
Extract.local_skysub_extract()
Extract.nsobj_to_extract
Extract.run()
Extract.show()
Extract.spec_flexure_correct()
MultiSlitExtract
SlicerIFUExtract
- pypeit.find_objects module
EchelleFindObjects
FindObjects
FindObjects.ivarmodel
FindObjects.objimage
FindObjects.skyimage
FindObjects.initial_sky
FindObjects.global_sky
FindObjects.skymask
FindObjects.outmask
FindObjects.extractmask
FindObjects.slits
FindObjects.sobjs_obj
FindObjects.spat_flexure_shift
FindObjects.tilts
FindObjects.waveimg
FindObjects.slitshift
FindObjects.vel_corr
FindObjects.create_skymask()
FindObjects.find_objects()
FindObjects.find_objects_pypeline()
FindObjects.get_instance()
FindObjects.get_platescale()
FindObjects.global_skysub()
FindObjects.initialize_slits()
FindObjects.run()
FindObjects.show()
MultiSlitFindObjects
SlicerIFUFindObjects
- pypeit.flatfield module
FlatField
FlatField.rawflatimg
FlatField.mspixelflat
FlatField.msillumflat
FlatField.flat_model
FlatField.list_of_spat_bsplines
FlatField.spec_illum
FlatField.build_mask()
FlatField.build_waveimg()
FlatField.extract_structure()
FlatField.fit()
FlatField.nslits
FlatField.run()
FlatField.show()
FlatField.spatial_fit()
FlatField.spatial_fit_finecorr()
FlatField.spectral_illumination()
FlatImages
FlatImages._bundle()
FlatImages._parse()
FlatImages._validate()
FlatImages.calib_file_format
FlatImages.calib_type
FlatImages.datamodel
FlatImages.fit2illumflat()
FlatImages.get_bpmflats()
FlatImages.get_procflat()
FlatImages.get_spat_bsplines()
FlatImages.is_synced()
FlatImages.shape
FlatImages.show()
FlatImages.version
detector_structure_qa()
illum_profile_spectral()
merge()
show_flats()
spatillum_finecorr_qa()
- pypeit.fluxcalibrate module
- pypeit.history module
- pypeit.inputfiles module
Coadd1DFile
Coadd2DFile
Coadd3DFile
Collate1DFile
FlexureFile
FluxFile
InputFile
InputFile._parse_setup_lines()
InputFile._read_data_file_table()
InputFile.cfg_lines
InputFile.data_block
InputFile.datablock_required
InputFile.filenames
InputFile.find_block()
InputFile.flavor
InputFile.from_file()
InputFile.get_pypeitpar()
InputFile.get_spectrograph()
InputFile.path_and_files()
InputFile.readlines()
InputFile.remove_comments_and_blanks()
InputFile.required_columns
InputFile.setup_name
InputFile.setup_required
InputFile.vet()
InputFile.write()
PypeItFile
RawFiles
SensFile
TelluricFile
grab_rawfiles()
- pypeit.io module
compress_file()
create_symlink()
dict_to_hdu()
dict_to_lines()
files_from_extension()
fits_open()
hdu_iter_by_ext()
header_version_check()
init_record_array()
initialize_header()
load_object()
load_sky_spectrum()
load_telluric_grid()
load_thar_spec()
parse_hdr_key_group()
rec_to_bintable()
rec_to_fits_col_dim()
rec_to_fits_type()
remove_suffix()
write_to_fits()
write_to_hdu()
- pypeit.manual_extract module
- pypeit.metadata module
PypeItMetaData
PypeItMetaData.spectrograph
PypeItMetaData.par
PypeItMetaData.configs
PypeItMetaData.type_bitmask
PypeItMetaData.calib_bitmask
PypeItMetaData.table
PypeItMetaData._build()
PypeItMetaData._check_calib_groups()
PypeItMetaData._get_cfgs()
PypeItMetaData._impose_types()
PypeItMetaData._repr_html_()
PypeItMetaData._set_calib_group_bits()
PypeItMetaData._vet_instrument()
PypeItMetaData.calib_groups
PypeItMetaData.clean_configurations()
PypeItMetaData.configuration_generator()
PypeItMetaData.construct_basename()
PypeItMetaData.construct_obstime()
PypeItMetaData.default_keys()
PypeItMetaData.edit_frame_type()
PypeItMetaData.finalize_usr_build()
PypeItMetaData.find_calib_group()
PypeItMetaData.find_configuration()
PypeItMetaData.find_frame_calib_groups()
PypeItMetaData.find_frame_files()
PypeItMetaData.find_frames()
PypeItMetaData.frame_paths()
PypeItMetaData.get_configuration()
PypeItMetaData.get_configuration_names()
PypeItMetaData.get_frame_types()
PypeItMetaData.ignore_frames()
PypeItMetaData.keys()
PypeItMetaData.maximum_number_of_configurations()
PypeItMetaData.merge()
PypeItMetaData.n_calib_groups
PypeItMetaData.n_configs
PypeItMetaData.remove_rows()
PypeItMetaData.set_calibration_groups()
PypeItMetaData.set_combination_groups()
PypeItMetaData.set_configurations()
PypeItMetaData.set_frame_types()
PypeItMetaData.set_pypeit_cols()
PypeItMetaData.set_user_added_columns()
PypeItMetaData.sort()
PypeItMetaData.unique_configurations()
PypeItMetaData.write()
PypeItMetaData.write_pypeit()
PypeItMetaData.write_sorted()
- pypeit.onespec module
- pypeit.orderstack module
- pypeit.pypeit module
PypeIt
PypeIt.pypeit_file
PypeIt.fitstbl
PypeIt.build_qa()
PypeIt.calib_all()
PypeIt.calib_one()
PypeIt.extract_one()
PypeIt.get_sci_metadata()
PypeIt.get_spec_file_name()
PypeIt.get_std_outfile()
PypeIt.load_skyregions()
PypeIt.msgs_reset()
PypeIt.objfind_one()
PypeIt.outfile_exists()
PypeIt.print_end_time()
PypeIt.qa_path
PypeIt.reduce_all()
PypeIt.reduce_exposure()
PypeIt.refframe_correct()
PypeIt.save_exposure()
PypeIt.science_path
PypeIt.select_detectors()
PypeIt.show_science()
PypeIt.spec_output_file()
- pypeit.pypeitdata module
- pypeit.pypeitsetup module
PypeItSetup
PypeItSetup.file_list
PypeItSetup.frametype
PypeItSetup.setups
PypeItSetup.pypeit_file
PypeItSetup.spectrograph
PypeItSetup.par
PypeItSetup.fitstbl
PypeItSetup.build_fitstbl()
PypeItSetup.from_file_root()
PypeItSetup.from_pypeit_file()
PypeItSetup.from_rawfiles()
PypeItSetup.generate_ql_calib_pypeit_files()
PypeItSetup.get_frame_types()
PypeItSetup.nfiles
PypeItSetup.remove_table_rows()
PypeItSetup.run()
- pypeit.pypmsgs module
Messages
Messages._cleancolors()
Messages._devmsg()
Messages._initialize_log_file()
Messages._print()
Messages.bug()
Messages.close()
Messages.disablecolors()
Messages.enablecolors()
Messages.error()
Messages.indent()
Messages.info()
Messages.info_update()
Messages.input()
Messages.newline()
Messages.prindent()
Messages.pypeitpar()
Messages.pypeitpar_text()
Messages.reset()
Messages.reset_log_file()
Messages.set_logfile_and_verbosity()
Messages.test()
Messages.warn()
Messages.work()
PypeItBitMaskError
PypeItDataModelError
PypeItError
PypeItPathError
- pypeit.sampling module
- pypeit.scattlight module
- pypeit.sensfilearchive module
- pypeit.sensfunc module
IRSensFunc
SensFunc
SensFunc._algorithm
SensFunc._bundle()
SensFunc.compute_blaze()
SensFunc.compute_throughput()
SensFunc.compute_zeropoint()
SensFunc.datamodel
SensFunc.empty_sensfunc_table()
SensFunc.eval_zeropoint()
SensFunc.extrapolate()
SensFunc.flux_std()
SensFunc.from_hdu()
SensFunc.get_instance()
SensFunc.internals
SensFunc.run()
SensFunc.sensfunc_weights()
SensFunc.splice()
SensFunc.version
SensFunc.write_QA()
UVISSensFunc
- pypeit.setup_package module
- pypeit.slittrace module
SlitTraceBitMask
SlitTraceSet
SlitTraceSet.left_flexure
SlitTraceSet.right_flexure
SlitTraceSet._base_header()
SlitTraceSet._bundle()
SlitTraceSet._parse()
SlitTraceSet._validate()
SlitTraceSet.assign_maskinfo()
SlitTraceSet.bitmask
SlitTraceSet.calib_file_format
SlitTraceSet.calib_type
SlitTraceSet.datamodel
SlitTraceSet.det_of_slit()
SlitTraceSet.from_hdu()
SlitTraceSet.get_maskdef_extract_fwhm()
SlitTraceSet.get_maskdef_objpos()
SlitTraceSet.get_maskdef_offset()
SlitTraceSet.get_radec_image()
SlitTraceSet.get_slitlengths()
SlitTraceSet.init_tweaked()
SlitTraceSet.internals
SlitTraceSet.mask_add_missing_obj()
SlitTraceSet.mask_flats()
SlitTraceSet.mask_wavetilts()
SlitTraceSet.mask_wvcalib()
SlitTraceSet.rm_tweaked()
SlitTraceSet.select_edges()
SlitTraceSet.slit_img()
SlitTraceSet.slit_info
SlitTraceSet.slit_spat_pos()
SlitTraceSet.slitord_id
SlitTraceSet.slitord_to_zero()
SlitTraceSet.slitord_txt
SlitTraceSet.spatial_coordinate_image()
SlitTraceSet.spatial_coordinates()
SlitTraceSet.spatid_to_zero()
SlitTraceSet.user_mask()
SlitTraceSet.version
assign_addobjs_alldets()
average_maskdef_offset()
get_maskdef_objpos_offset_alldets()
merge_user_slit()
- pypeit.spec2dobj module
AllSpec2DObj
Spec2DObj
Spec2DObj.head0
Spec2DObj._base_header()
Spec2DObj._bundle()
Spec2DObj._validate()
Spec2DObj.calc_chi_slit()
Spec2DObj.datamodel
Spec2DObj.detname
Spec2DObj.from_file()
Spec2DObj.from_hdu()
Spec2DObj.gen_qa()
Spec2DObj.hdu_prefix
Spec2DObj.internals
Spec2DObj.select_flag()
Spec2DObj.update_slits()
Spec2DObj.version
- pypeit.specobj module
SpecObj
SpecObj.__repr__()
SpecObj._bundle()
SpecObj._validate()
SpecObj.apply_flux_calib()
SpecObj.apply_helio()
SpecObj.apply_spectral_flexure()
SpecObj.best_ext_match()
SpecObj.copy()
SpecObj.datamodel
SpecObj.from_arrays()
SpecObj.get_box_ext()
SpecObj.get_opt_ext()
SpecObj.has_box_ext()
SpecObj.has_opt_ext()
SpecObj.internals
SpecObj.med_fwhm()
SpecObj.med_s2n()
SpecObj.mnx_wave
SpecObj.ready_for_extraction()
SpecObj.set_name()
SpecObj.slit_order
SpecObj.slit_orderindx
SpecObj.to_arrays()
SpecObj.to_hdu()
SpecObj.to_xspec1d()
SpecObj.update_flex_shift()
SpecObj.version
- pypeit.specobjs module
SpecObjs
SpecObjs.summary
SpecObjs.__getattr__()
SpecObjs.__getitem__()
SpecObjs.__setattr__()
SpecObjs.add_sobj()
SpecObjs.append_neg()
SpecObjs.apply_flux_calib()
SpecObjs.copy()
SpecObjs.from_fitsfile()
SpecObjs.get_extraction_groups()
SpecObjs.get_std()
SpecObjs.make_neg_pos()
SpecObjs.name_indices()
SpecObjs.nobj
SpecObjs.purge_neg()
SpecObjs.ready_for_fluxing()
SpecObjs.remove_sobj()
SpecObjs.set_names()
SpecObjs.shape
SpecObjs.size
SpecObjs.slitorder_indices()
SpecObjs.slitorder_objid_indices()
SpecObjs.unpack_object()
SpecObjs.version
SpecObjs.write_info()
SpecObjs.write_to_fits()
get_std_trace()
lst_to_array()
- pypeit.telescopes module
APFTelescopePar
BokTelescopePar
GTCTelescopePar
GeminiNTelescopePar
GeminiSTelescopePar
HiltnerTelescopePar
JWSTTelescopePar
KPNOTelescopePar
KeckTelescopePar
LBTTelescopePar
LDTTelescopePar
MMTTelescopePar
MagellanTelescopePar
NOTTelescopePar
NTTTelescopePar
P200TelescopePar
SOARTelescopePar
ShaneTelescopePar
TNGTelescopePar
VLTTelescopePar
WHTTelescopePar
- pypeit.tracepca module
- pypeit.utils module
DFS()
_lhscentered()
_lhsclassic()
_lhscorrelate()
_lhsmaximin()
_pdist()
add_sub_dict()
all_subclasses()
arr_setup_to_setup_list()
array_to_explist()
boxcar_smooth_rows()
calc_ivar()
clip_ivar()
concat_to_setup_list()
contiguous_true()
convolve_fft()
cross_correlate()
distinct_colors()
echarr_to_echlist()
echlist_to_echarr()
embed_header()
explist_to_array()
fast_running_median()
find_nearest()
find_single_file()
get_time_string()
growth_lim()
index_of_x_eq_y()
inverse()
is_float()
lhs()
list_of_spectral_lines()
load_pickle()
nan_mad_std()
nearest_unmasked()
occurrences()
polyfit2d()
polyfitter2d()
polyval2d()
pyplot_rcparams()
pyplot_rcparams_default()
rebinND()
rebin_slice()
recursive_update()
replace_bad()
robust_meanstd()
save_pickle()
setup_list_to_arr_setup()
setup_list_to_concat()
smooth()
spec_atleast_2d()
string_table()
subsample()
to_string()
yamlify()
zero_not_finite()
- pypeit.wavecalib module
BuildWaveCalib
BuildWaveCalib.steps
BuildWaveCalib.wv_calib
BuildWaveCalib.arccen
BuildWaveCalib.maskslits
BuildWaveCalib.gpm
BuildWaveCalib.nonlinear_counts
BuildWaveCalib.wvc_bpm
BuildWaveCalib.build_wv_calib()
BuildWaveCalib.echelle_2dfit()
BuildWaveCalib.extract_arcs()
BuildWaveCalib.frametype
BuildWaveCalib.redo_echelle_orders()
BuildWaveCalib.run()
BuildWaveCalib.show()
BuildWaveCalib.update_wvmask()
WaveCalib
- pypeit.wavemodel module
- pypeit.wavetilts module
BuildWaveTilts
BuildWaveTilts.spectrograph
BuildWaveTilts.steps
BuildWaveTilts.mask
BuildWaveTilts.all_trcdict
BuildWaveTilts.tilts
BuildWaveTilts.all_tilts
BuildWaveTilts.final_tilts
BuildWaveTilts.gpm
BuildWaveTilts._parse_param()
BuildWaveTilts.extract_arcs()
BuildWaveTilts.find_lines()
BuildWaveTilts.fit_tilts()
BuildWaveTilts.make_tbl_tilt_traces()
BuildWaveTilts.model_arc_continuum()
BuildWaveTilts.run()
BuildWaveTilts.trace_tilts()
WaveTilts
show_tilts_mpl()
Module contents
pypeit package initialization.
The current main purpose of this is to provide package-level globals that can be imported by submodules.